congenital hypothyroidism caused by nitrate poisoning. Yes, it does cause things such as an underbite, longer gestation, foaling difficulties, silky haircoat and leg problems. However, those leg problems consist of weak extensor tendons, swellings on the knees, and immature bones in knees &/or hocks. I have personal experience back when we were raising Morgans.
We also had foaling problems in 2004; those problems were due to an iodine deficiency and nitrate poisoning. Our foals appeared normal, but because they never stood we had no indication of how affected their legs were--had they been strong enough to stand we may have found that their extensor tendons were severely affected.
Regardless, back in 1991 when we had our problem with our Morgans I talked to a research vet at WCVM Saskatoon--he was specializing in congenital hypothyroidism, though at that time his studies were fairly new & there were many unanswered questions. I talked to him again in 2004, and he had many more answers for me this time around. Because some on here had talked of the deformities their foals had from nitrate poisoning, I asked him about the leg deformities. He said there are no deformities as such, though he thought it possible that when people mentioned deformities they were referring to the weak extensor tendons, the immature bones in the joints (which can lead to tarsal crushing syndrome) & the swollen knees--all of which I was familiar with. Otherwise, he said, congenital hypothyroidism does not cause true deformities. Obviously his research has been mainly on big horse breeds where dwarfism isn't an issue in the first place. I have no idea how many Miniatures he has studied.
Since in big horses congenital hypothyroidism/nitrate poisoning does not cause dwarfism symptoms other than the underbite & silky haircoat, if in Miniatures it is causing "typical" dwarf characteristics such as the domed forehead, disproportionately short legs, twisted, deformed legs, etc. etc., then I would venture a guess that in these Minis there is more going on than "typical" nitrate poisoning/congenital hypothyroidism. My theory--and obviously it is just a theory--is that with dwarfism existing in Miniatures, the nitrate poisoning may trigger the dwarfism gene to be more apparent. I shall have to call the university one day and discuss this theory with the research vet, but so far I haven't gotten around to doing that.
Minor deformities caused by congenital hypothyroidism are reversible in some cases; our Morgan filly that was born with an underbite and weak legs did grow out of it--as her own thyroid gland began functioning, her jaw grew out so that she had a perfect bite, and her weak tendons did heal--in time her extensor tendons became normal, her knee swellings went away, and she never had a problem with tarsal crushing. But, in other horses that are more severely affected, the condition does not correct itself completely, regardless of diet. so, I have to think that if a Mini is quite badly affected by dwarfism caused by nitrates...it would not be treatable/correctable.