Navicular is a strange thing to be diagnosed with, even if your horse was a Quarter Horse. Veterinarians don't use the term "Navicular Disease" easily these days, preferring to refer to this variety of lamenesses as "Heel Pain Syndrome". In the past, any lameness associated with heel pain was referred to as Navicular. Now there are so many variables that can cause the lameness, and it is more often a problem with the coffin joint or the navicular bursa or any number of things, rather than the navicular bone itself.
Did your vet do a navicular x-ray? It used to be that if a horse had invaginations in the navicular bone, it was assumed that was the cause of the lameness, however, with all the "routine" x-ray screening for prepurchase exams, etc, it's been found that there can be perfectly sound horses with navicular x-rays that suggest they should be extremely lame.
What about blocking? Navicular disease is bilateral. When a nerve block is administered to the lame foot, the horse will then show lameness on the opposite foot.
Anyway, I'd be interested to hear the results of the diagnostics. I've never heard of navicular/heel pain problems in a Miniature Horse before. Regardless, there are many, many options for treatment to maintain soundness for as long as possible.